| 1. |
BLAST db |
Latest release of the BLAST databases (e.g nr, nt, est, etc) in FASTA format. - NCBI
|
NCBI |
BII |
Download
|
Archive |
Twice weekly |
7 days |
| 2. |
BLAST db |
Latest release of the BLAST databases (e.g nr, nt, est, etc) in FASTA format. - NCBI |
NCBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 3. |
BLAST db |
Latest release of the BLAST databases (e.g nr, nt, est, etc) in FASTA format. - NCBI |
NCBI |
BII |
Access
|
Operational |
|
7 days |
| 4. |
BLAST db |
Latest release of the BLAST databases (e.g nr, nt, est, etc) in FASTA format. - NCBI
|
NCBI |
NUS-BIC |
Access
|
Operational with web interface |
Weekly |
|
| 5. |
BLOCKS |
Protein conserved regions database. |
NCBI, Informax Inc |
BII |
Download
|
Archive |
Weekly |
14 days |
| 6. |
BLOCKS |
Protein conserved regions database. |
NCBI, Informax Inc |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 7. |
CDD |
Conserved Domain Database. |
NCBI |
BII |
Download
|
Archive |
Weekly |
As Bandwidth Allows |
| 8. |
Celera Genomic Data |
Whole Genome Shotgun sequences from Celera for human, mouse and Rat |
NCBI |
BII |
Download
|
Archive |
Weekly |
14 days |
| 9. |
dbEST |
EST database |
|
NUS-BIC |
Access
|
Operational |
Weekly |
|
| 10. |
DDBJ |
|
|
NUS-BIC |
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|
Archive |
Weekly |
|
| 11. |
EMBL |
European Molecular Biology Laboratory |
|
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 12. |
EMBL |
European Molecular Biology Laboratory
|
|
BII |
Access
|
Operational |
|
|
| 13. |
Ensembl |
Automatically annotated genome database at EBI, UK. |
Ensembl |
BII |
Download
|
Archive |
Weekly |
14 days |
| 14. |
Ensembl |
Automatically annotated genome database at EBI, UK. |
Ensembl |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 15. |
Ensembl |
Automatically annotated genome database at EBI, UK.
|
Ensembl |
BII |
Access
|
Operational |
|
|
| 16. |
Ensembl |
Automatically annotated genome database at EBI, UK.
|
Ensembl |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 17. |
Enzyme |
Enzyme database. |
EBI |
BII |
Download
|
Archive |
Weekly |
10 days |
| 18. |
Enzyme |
Enzyme database. |
EBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 19. |
euGenes |
Eukaryote Genes Summary Databank |
euGenes |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 20. |
Genbank |
NIH sequence database. Collection of all publicly available DNA sequence. |
NCBI |
BII |
Download
|
Archive |
Weekly |
14 days |
| 21. |
Genbank |
NIH sequence database. Collection of all publicly available DNA sequence. |
NCBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 22. |
Gene Ontology |
Geneontology database. |
Geneontology |
BII |
Download
|
Archive |
Weekly |
10 days |
| 23. |
Gene Ontology |
Geneontology database. |
Geneontology |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 24. |
GenPept |
Contains mostly unannotated translations of GenBank sequences. |
NCICRF |
BII |
Download
|
Archive |
Weekly |
14 days |
| 25. |
GenPept |
Contains mostly unannotated translations of GenBank sequences. |
NCICRF |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 26. |
IMGT |
|
|
NUS-BIC |
Access
|
Operational |
Weekly |
|
| 27. |
InterPro |
Integrated protein domains and functional sites database. |
EBI |
BII |
Download
|
Archive |
Weekly |
10 days |
| 28. |
InterPro |
Integrated protein domains and functional sites database. |
EBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 29. |
InterPro |
Integrated protein domains and functional sites database. |
EBI |
BII |
Access
|
Operational |
|
|
| 30. |
KEGG |
KEGG pathway database, Kyoto, Japan. |
KEGG |
BII |
Download
|
Archive |
Weekly |
14 days |
| 31. |
KEGG |
KEGG pathway database, Kyoto, Japan. |
KEGG |
NUS-BIC |
Access
|
Operational |
Weekly |
|
| 32. |
NCBI Genomes |
Genomic database of various organisms. |
NCBI |
BII |
Download
|
Archive |
Weekly |
14 days |
| 33. |
NCBI Genomes |
Genomic database of various organisms. |
NCBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 34. |
NRL3D |
Sequence information extracted from PDB for residues with resolved three-dimensional coordinates. |
Infobiogen |
BII |
Download
|
Archive |
Weekly |
As Bandwidth Allows |
| 35. |
nr_proteins |
|
|
NUS-BIC |
Access
|
Operational |
Weekly |
|
| 36. |
PDB |
Protein Data Bank |
RCSB |
NUS-BIC |
Access
|
Operational with web interface |
Weekly |
|
| 37. |
Pfam |
Protein families database at Sanger Centre, UK. |
EBI |
BII |
Download
|
Archive |
Weekly |
10 days |
| 38. |
Pfam |
Protein families database at Sanger Centre, UK. |
EBI |
NUS-BIC |
Download
|
Archive |
|
|
| 39. |
Pfam |
Protein families database at Sanger Centre, UK.
|
EBI |
BII |
Access
|
Operational |
|
|
| 40. |
PIR |
The protein identification resource database. |
EBI |
BII |
Download
|
Archive |
Weekly |
As Bandwidth Allows |
| 41. |
PIR |
The protein identification resource database. |
EBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 42. |
PRINTS |
|
|
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 43. |
PRINTS |
|
|
BII |
Access
|
Operational |
|
|
| 44. |
Prosite |
Protein families and domains database. |
EBI |
BII |
Download
|
Archive |
Weekly |
10 days |
| 45. |
Prosite |
Protein families and domains database. |
EBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 46. |
Prosite |
Protein families and domains database.
|
EBI |
BII |
Access
|
Operational |
|
|
| 47. |
Rebase |
Restriction enzyme database at New England Biolabs, USA. |
EBI |
BII |
Download
|
Archive |
Weekly |
10 days |
| 48. |
Rebase |
Restriction enzyme database at New England Biolabs, USA. |
EBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 49. |
RefSeq |
Reference Sequence database. |
NCBI |
BII |
Download
|
Archive |
Twice weekly |
5 days |
| 50. |
RefSeq |
Reference Sequence database. |
NCBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 51. |
RefSeq |
Reference Sequence database |
NCBI |
BII |
Access
|
Operational |
|
|
| 52. |
SNP |
Single Nucleotide Polymorphisms (SNP) database. |
NCBI |
BII |
Download
|
Archive |
Weekly |
As Bandwidth Allows |
| 53. |
SPproteomes |
Non-redundant and complete protein database from SwissProt and Trembl. |
EBI |
BII |
Access
|
|
|
14 days |
| 54. |
SP_TR_NRDB |
Database comprising sets of SwissProt and Trembl records corresponding to complete non-redundant proteomes for each fully sequenced organisms in public domain. |
EBI |
BII |
Download
|
Archive |
Weekly |
14 days |
| 55. |
SRS Databanks |
|
|
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 56. |
SwisProt |
High level of annotation, low level of redundancy protein sequence database |
EBI |
BII |
Download
|
Archive |
Twice weekly |
5 days |
| 57. |
SwisProt |
High level of annotation, low level of redundancy protein sequence database |
EBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 58. |
SwisProt |
High level of annotation, low level of redundancy protein sequence database
|
EBI |
BII |
Access
|
Operational |
|
|
| 59. |
Taxonomy |
Taxonomy database. |
NCBI |
BII |
Download
|
Archive |
Weekly |
10 days |
| 60. |
Taxonomy |
Taxonomy database. |
NCBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 61. |
Taxonomy |
Taxonomy database.
|
NCBI |
BII |
Access
|
Operational |
|
|
| 62. |
TrEMBL |
Computer annotated supplement of Swiss-Prot. Contains translations of EMBL nucleotide sequence entries not yet integrated in Swiss-Prot. |
EBI |
BII |
Download
|
Archive |
Twice weekly |
5 days |
| 63. |
TrEMBL |
Computer annotated supplement of Swiss-Prot. Contains translations of EMBL nucleotide sequence entries not yet integrated in Swiss-Prot. |
EBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 64. |
TrEMBL |
Computer annotated supplement of Swiss-Prot. Contains translations of EMBL nucleotide sequence entries not yet integrated in Swiss-Prot.
|
EBI |
BII |
Access
|
Operational |
|
|
| 65. |
UCSC |
UCSC Genome browser |
UCSC |
BII |
Access
|
Operational |
|
|
| 66. |
UCSC (Mouse) |
Annotations tracks information for mouse and human genome. |
UCSC |
BII |
Download
|
Archive |
Weekly |
14 days |
| 67. |
Unigene |
Non-redundant set of gene-oriented clusters database. |
NCBI |
BII |
Download
|
Archive |
Weekly |
10 days |
| 68. |
Unigene |
Non-redundant set of gene-oriented clusters database. |
NCBI |
NUS-BIC |
Download
|
Archive |
Weekly |
|
| 69. |
UTR |
untranslated regions of eukaryotic mRNAs database
|
UTR |
NUS-BIC |
Download
|
Archive |
Weekly |
|
